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under continuing construction
these page is
geared to 'recording' links to tools and sites relevant to:
Preference given to resources that offer community / open source software.
Preference also given to leading academic/non-profit sites, and to non-paywall commercial sites. Note, includes inactive/discontinued platforms that may still be web reachable. Some have useful/working GitHub code and information entries.
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AI/MI/ML Codes & Frameworks
On Line & other Courses
Principal Texts and Papers
Ontologies & Wordbanks
BioPortal Biological and Medical Ontologies
Portal (repository of 779
ontologies).
NELL:
Never-Ending Language Learning (CMU)
YAGO:
Max Planck Institute
BioMedical Software Platforms
QIIME
2™ microbiome bioinformatics platform
REACTOME
Biomolecular pathways, reactions, proteins
Platforms
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Coding and Software
BlueGriffon
(html editor)
Docker
(application container)
AllegroGraph
(Graph Database)
Neo4j
(Graph Database)
yWorks/yFiles
(proprietary) Diagramming Tools
Scholarship Search & Archives
Google
Scholar, Google
Patents
arXiv
preprint server
SocArXiv
Social Sciences server
BioArXiv
Biological Sciences server
medRxiv
Medical & Health Science Server
CZI Meta
Biomedical Literature
NIH
Databases (PubMed, etc)
General References & Sources
Interesting+Useful DataSets
& Services
Catalogue of Life -
online database of the world's known species of animals, plants,
fungi and micro-organisms.Tools
and Services of European Bioinformatics Institute (EMBL-EBI)
ENCODE
Project ENCyclopedia Of DNA Elements
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Interesting sites
and topics
Vector
Institute (Toronto)
Mila
(Montreal,QC)
CSAIL MIT Computer Science & Artificial Intelligence
Laboratory
Future
of Humanity Institute (Oxford)
MIRI
(Machine Intelligence Research Institute
IBM Watson [developer resources] Bio / Medical Resources Earth Microbiome Project (EMP) |
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